Start your morning with a bang with our Ham and Egg Muffin Cups! Packed with spinach, tomatoes, and cheese – they’re a make-ahead marvel for those busy mornings.

For more breakfast recipes try Casserole with Bacon, Asparagus Frittata, or Chicken Apple Sausage.

egg muffin cups on a plate. this recipe
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Why This Recipe Works

  • Quick & Easy – A breakfast recipe that’s fast and super easy to make. Ready in less than 30 minutes using only simple ingredients – perfect for those hectic mornings. 
  • Healthy Kickstart – Jumpstart your day with this low-carb breakfast option. Loaded with protein and enhanced with nutritional spinach.
  • Make Ahead – These egg muffin cups can be doubled to enjoy a hassle-free, tasty breakfast throughout the week – saving time and effort, along with our chia seed pudding with yogurt.

Ingredients

All the ingredients for these ham and egg cups should be readily available at your nearby grocery store:

ingredients for ham and egg muffin cups.
  • Eggs: Bind the ingredients together, creating a smooth, custard-like texture.
  • Deli ham: Thinly sliced ham adds a savory depth to every bite. Baked or honey ham also works well.
  • Cheese: Melts beautifully, giving a gooey, creamy texture. Use cheddar cheese or mozzarella. 
  • Fresh spinach: Brings a burst of nutrition and a subtle, earthy flavor.
  • Onion: Adds a slight crunch with a sharp, aromatic flavor.
  • Tomato: Provides a juicy, fresh contrast to the other ingredients.

See the recipe card for full information on ingredients and quantities.

Variations

Here are some ways you can customize this easy ham and cheese egg muffin recipe to your taste:

  • Bacon Swap: Use round slices of back bacon instead of ham for a smoky flavor twist.
  • Meat Variety: Experiment with sliced deli turkey or even salami for a different meaty experience.
  • Veggie Boost: Add tomatoes, green pepper, and a sprinkle of paprika for an extra veggie kick.
  • Mushroom Magic: Add minced baby portabella mushrooms for some earthy depth.
  • Flavor Enhancers: A dash of garlic powder or dry mustard adds more savory goodness.
  • Green Garnish: Sprinkle sliced green onions on top for a fresh, crunchy finish.

How to Make

Easily create these healthy egg cups in less than 30 minutes. Just follow these simple steps for a quick batch. For detailed guidance, see the recipe card below.

Step 1: Line the muffin cups with ham slices.

Step 2: Add spinach, onions, tomatoes, and cheese into each ham-lined cup.

Step 3: Whisk eggs with salt in a large bowl.

Step 4: Pour egg mixture into cups. Bake at 350F for 20 minutes.

Expert Tips

Try these expert tips so your ham egg cups turn out perfectly every time:

  • Grate Cheese: Avoid pre-shredded cheese, as it doesn’t melt as well. Freshly grated cheese will give you that perfect melt.
  • Pan Plan: Use a standard 12-cup muffin pan for ideal sizing. Don’t forget to grease it well with nonstick cooking spray for easy release.
  • Silicone Magic: Skip the traditional metal tin and try a silicone muffin tin. It’s a game-changer and allows for a much easier muffin release.
  • Time It Right: Tailor the cooking time to your preferences – use less time for a softer texture.
  • Egg-stra Care: When pouring the egg mixture, fill the muffin tin just enough to cover the fillings. Overfilling might lead to messy spills.

How to Store

Follow these storage tips to keep your egg muffins with ham nice and fresh:

  • Fridge: Store in an airtight container in the refrigerator. They should stay fresh for up to 5 days.
  • Freezer: To freeze, place the muffin cups in an airtight container, separating each layer with sheets of parchment paper so they don’t stick. They should last 2 months.
  • Reheat: To reheat a frozen muffin, place it on a plate, cover it with a bowl, and microwave at half power for 1 minute. Adjust the time depending on the microwave’s power and the number of muffins.

Sides

These ham and egg muffins pair well with a variety of tasty sides:

  • Tomato Salsa: Our fresh tomato salsa recipe makes for a vibrant, zesty addition to your ham, egg, and cheese cups.
  • Cheesy Guacamole: The smooth, rich guacamole with a hint of cheese complements the meaty muffins well.
  • Sour Cream: A dollop of sour cream on top of the muffin cups adds a slight tang and creaminess. 
  • Mixed Green Salad: A simple mixed green salad brings a light and fresh element to the meal.
  • Whole Grain Toast: A slice of toasted whole grain bread adds some wholesome crunch.
cut up egg muffin on a plate.

Recipe FAQs

Can egg muffins be eaten cold?

Yes, egg muffins can be enjoyed cold. Egg recipes are very versatile and taste great straight from the refrigerator. 

Just remember to store your egg muffins properly in an airtight container. 

Do I need a muffin tin to make these?

A muffin tin is ideal for this recipe, as it’s designed to create the perfect cup shapes needed for this easy snack-style breakfast. 

If you’re up to some experimentation, you could try creating a flatter, tart-style version using puff-pastry sheets, similar to our Avocado Pizza Recipe.

Should I use cupcake liners?

Cupcake liners might seem like a good idea, but usually, they just lead to more prep. This is because liners tend to stick – so it’s still important to still grease the muffin tin well. 

We think it’s better to use a well-prepared traditional egg muffin tin – just use plenty of cooking spray or oil to grease it. Alternatively, a silicone muffin tray works really well – letting you easily pop out the muffins. 

Are these muffin cups keto-friendly or low-carb?

Yes, these egg and ham muffins are keto-friendly and low-carb. They are made mainly with eggs and meat – which are great for low-carb diets. 

Just be mindful of the type of cheese used. Some cheeses don’t have the same low-carb benefits – especially low-fat and processed varieties.

More Breakfast Recipes

Leftover Pasta Frittata

Power Smoothie

Banana Carrot Muffins

Flaxseed and Blueberry Oatmeal

If you try Ham and Egg Muffin Cups, please leave a star rating and let me know how you like the recipe in the comments below.

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egg muffin cups on a plate.

Ham and Egg Muffin Cups

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 5 from 1 review
  • Author: Katya
  • Prep Time: 15 mins
  • Cook Time: 20 mins
  • Total Time: 35 mins
  • Yield: 6
  • Category: Breakfast
  • Method: Baked
  • Cuisine: American
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Description

These easy ham and egg muffins come together in a cinch! They are packed with spinach, tomatoes, white cheddar, and ham. 

Ingredients

Units Scale
  • 12 thin slices deli ham
  • ¼ cup yellow onion, finely chopped
  • 1 roma tomato, chopped
  • ½ cup chopped fresh spinach, lightly packed
  • ½ cup shredded cheddar cheese or mozzarella cheese
  • 10 large eggs
  • ½ tsp. kosher salt
  • Freshly ground black pepper, to taste
  • Nonstick cooking spray

Instructions

  1. Preheat oven to 350 degrees F. Coat a 12-cup standard muffin pan with cooking spray.
  2. Line muffin cups with ham slices. Divide onions, tomatoes, spinach, and cheese evenly among the cups.
  3. In a large bowl whisk together the eggs and salt. Season with black pepper, to taste. Using a small ladle, spoon the egg mixture evenly into the muffin cups. 
  4. Bake for 18-20 minutes. Cool for 5 minutes, then run a knife around the muffins, and remove. Serve warm.

Nutrition

  • Serving Size: 2 egg muffins
  • Calories: 260
  • Sugar: 1.2 g
  • Sodium: 1162.8 mg
  • Fat: 14.1 g
  • Carbohydrates: 4.9 g
  • Protein: 27.9 g
  • Cholesterol: 370 mg

Recipe originally published May 2018 but since been updated with additional information.